Saturday, April 7, 2012

Party Time!

Helium Shortage Leaves Scientists In No Mood To Celebrate


Of course neutron scattering, NMR spectroscopy and MRI imaging are no fun.
Boring medical scans never put a smile on anyone's face, did they?

Party balloons are what put people in the right mood.

All those lovely balloons that just go up, up, up and away?
They're filled with helium, of course.
But because in 1996 Congress vowed to sell off the U.S.'s large helium stockpile by 2015, the price of helium has been kept artificially low even as the demand for the gas has soared, and many a party balloon has been perked up as a result.

And now there's hardly any helium left.
So we'll have to stop detecting neutrons, cooling samples down, doing MRI scans, determining molecular structures etc.

All the more time to spend having parties, don't you think?


Sunday, March 11, 2012

Golden Eagles in Tennessee and Scotland


Good to read in the Knoxville News Sentinel that Golden Eagles may be soaring above the East Tennessee mountains somewhat more frequently these days. I remember them from the 1980s in North-West Scotland, where my father and his wife lived, in a place called Achnanellan, on the banks of Loch Shiel. Achnanellan is hidden in the wilderness, an old 17th century croft house with no road (you have to cross the Loch to get to it) and no neighbours within 4 miles. A place of ferocious weather and swarms of midges, of rich lichen and peat.
Here it is - the croft is a tiny white speck in the middle:



Achnanellan means "Field Near the Island", the island being St. Finnan's Isle, a windswept ancient burial ground. I set foot on it, and wondered at the dour, very old crosses (below). The locals had divided half of it for Protestants and half for Catholics, and placed pennies in the trees as votive offerings. There was maybe one burial per year there in the 1980s, probably many more before the brutal Highland clearances. The old bronze bell in the ruined chapel was still there, rumored to be a thousand years old - no-one had stolen it.





As for the eagles, they were always far above our heads, 1000 ft or so, hunting rabbits with acuity from on high. They fly in monogamous pairs and look like flying planks. It was difficult to fully appreciate their 7-foot wingspan from that distance, but pictures of one digging its talons into a cameraman truly bring home their size and power. Achnanellan, St. Finnan's Isle and Loch Shiel belonged to the eagles.

Thursday, March 8, 2012

The DOE:Industry Supercomputing Summit.....

.....in Austin TX, from which I just came back, brought together Industrial R&D and National Lab research directors. Secretary Chu gave an entertaining talk on three hours of sleep describing how computations on DOE facilities have led to potentially commercially important new designs of trucks, buildings etc and I had the pleasure of sitting next to the CEO of Ramgen, a company that has used the supercomputer to design a new, efficient jet engine. Only complaint is the usual one - the quality of the breakfasts, which seems to have been downgraded since the "Scientists Gone Wild" news report some years ago....

Thursday, February 23, 2012

A Success in Structure-Based Drug Design


News reports today state that vermurafenib, an oncogenic B-RAF kinase inhibitor, doubles the length of survival on average of those 50% of metastatic melanoma patients that possess the relevant mutation. This is a success for drug design guided by principles of protein structure, as the drug was discovered by examining interactions of candidates within the binding pocket of the enzyme.
Molecular biophysics in the service of medicine! Hopefully the structure-based screening work will soon be able to be effectively done virtually. At least, thats what we and many others are working on.....

Monday, February 6, 2012

Campus Paris-Saclay

Of course, I like to follow what happens to places where I used to work and live. One of these was the Plateau de Saclay, and this, it seems has just been selected for gargantuan funding under IDEX-2.

IDEX appears to be the French version of the "Exzellenzinitiative" in Germany, in which I partook six years ago. This came when Germany recognized that having a couple of universities in the top twenty would do wonders for its image, so the Minister concerned suggested creating a Teutonic MIT. Now you can't just do this, because it takes a lot of dosh, and putting all that money in one place wasn't politically viable (too few would benefit and the rest would lose), so it was diluted a bit, and instead gave a useful but, in my opinion, indecisive helping hand to the top 10-15 universities. (A minuscule fraction of the Heidelberg funding went to paying part of my visits there over the last 5 years).

Now, it appears, the French are thinking likewise, and with massive amounts of dough (about $10bn). Now this goes against the mores of the egalitarian France I used to know that would fund individual CNRS researchers with small salaries, no equipment and give them complete freedom for life with no accountability. But even France, it seems, can't abide languishing way down in the Shanghai rankings, and so it is that there will be the haves and have-nots. Paris-Saclay is a big 'have' and will be drinking champagne. Grenoble, another candidate, and where I did my Ph.D., lost out, so they will have to hit the whisky.

Paris-Saclay: Le Campus Aujourd'hui






Le Campus Demain



Wednesday, January 18, 2012

Frequent Flyer Miles - the Only Safe Currency?

I'm back in Germany (for the very successful doctoral exams of Tomasz Berezniak (good luck in your postdoc in Munich!), Mithun Biswas (good luck in Frankfurt!) and Mai Zahran (good luck in New York!)). When I was younger I used to even enjoy long flights to distant lands, but flying across the Atlantic 48 times in the last six years (!) has been a right royal pain in the butt. However, a slight benefit has been that I have racked up Frequent Flyer miles.

Now, I have always considered 'miles' programs as close-to-worthless ephemeral, slippery corporate traps. (However, I admit I have occasionally used them to upgrade to business class in a usually vain effort to get some sleep on the West to East overnight leg.) So it was amusing to read in the latest issue of Der Spiegel that there is a class of person so hell bent on earning the top miles status that they will go to almost any lengths. The Spiegel reports accompanying a group of six people pointlessly flying round-trip from Frankfurt to Innsbruck on a special Lufthansa chartered plane just to get the miles - the plane just touched down in the Alps a few seconds then took off again to fly back. Another strategy is that of Wolfgang Reigert, who sits all night in front of his computer looking for the cheapest ticket with the most miles e.g., Frankfurt to New York via Amsterdam, Dubai, Rio and Panama then sits in the plane for two days. It seems that the break-even price is 13 Euros for 1000 miles: any more and it's not worth it.
Apparently hardcore miles-grabbing 'cartels' have cropped up - one hired a female student to check in at the Lufthansa machines with a pile of frequent flyer cards, the owners pocketing the miles while never even leaving their sofas.
Of course, it all ends in tears. One miles-hunter succinctly expressed his dilemma in a frequent flyer forum : "I was so determined to become Platinum that I'm now deeply in debt and can't afford to buy any flights. And, as far as I can see, most Platinum benefits can only be claimed by people actually flying. Seems somehow stupid, doesn't it?"

Wednesday, January 4, 2012

How to Judge Scientists

Well, my 300th scientific article was just accepted for publication (N. Smolin, R. Biehl, G.R. Kneller, D. Richter and J.C. Smith "Functional Domain Motions in Proteins on the ~1-100ns Timescale: Comparison of Neutron Spin Echo Spectroscopy of Phosphoglycerate Kinase with Molecular Dynamics Simulation, Biophysical Journal - good job, Nikolai!) and there will be a few beers in the Union Jack pub later on in the week. However, this kind of artificial milestone brings one to reflect on how really to judge scientists.

Clearly, although a large number of publications does point to some aspect of productivity, such as, possibly, getting involved in a lot of projects and helping bring them to fruition, it is a very one-dimensional metric and misses important elements of scientific life. Numbers of citations, h-factors and the like also have their problems (just as an anecdote, for example, a very famous physicist working at Saclay when I was there once said one of his most cited articles was one he got wrong - his rivals loved pointing this out in their own publications!).

So how can one judge scientists? Well, increasingly, discoveries result from the voluntary sharing and development of knowledge through collaboration, rather than individual discoveries, and so an intriguing recent article by Azoulay et al tries to quantitatively track effects on collaborations of the ideas that scientists create. The concept is that a scientist will influence the people with whom they work, by forming an "invisible college" of ideas. To quantify this influence they tracked the publication productivity of faculty-level collaborators of eminent scientists in the life sciences. They found that if an eminent scientist suddenly and tragically died before the end of their career (mostly of heart attacks, but in the sample studied three were actually murdered!) then the publication productivity of their collaborators subsequently irreversibly declined on average by 8%.

The authors concluded that the effects of, as they call it, "superstar extinction" appear to be driven by the loss of an irreplaceable source of scientific ideas. My own opinion is that while this may indeed account for some of their observed effect, the collaborative nature of science means that success depends on not only the exchange of scientific ideas, but also inevitably social aspects such as friendship, motivation, drive and team spirit. When sources of these are not replaced then productivity will decrease.